PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g25230
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 1273aa    MW: 141303 Da    PI: 9.065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g25230genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001411801203223
                  EET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                  +Cp   C+k F ++ +L++H r+H
  CA03g25230 1180 VCPveGCKKKFFSHKYLVQHRRVH 1203
                  69999*****************99 PP

2zf-C2H211.90.0007112391265123
                  EEET..TTTEEESSHHHHHHHHHH..T CS
     zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                  y+C    Cg++F+  s++ rH r+  H
  CA03g25230 1239 YVCAetGCGQTFRFVSDFSRHKRKtgH 1265
                  89********************99666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.0E-151960IPR003349JmjN domain
PROSITE profilePS5118314.3952061IPR003349JmjN domain
PfamPF023752.8E-152154IPR003349JmjN domain
SMARTSM005589.0E-49187356IPR003347JmjC domain
PROSITE profilePS5118432.57190356IPR003347JmjC domain
SuperFamilySSF511972.61E-25202371No hitNo description
PfamPF023731.1E-36220339IPR003347JmjC domain
SMARTSM003557.411561178IPR015880Zinc finger, C2H2-like
SMARTSM003550.01211791203IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.4E-511791207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.57211791208IPR007087Zinc finger, C2H2
PROSITE patternPS00028011811203IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-911951237No hitNo description
Gene3DG3DSA:3.30.160.602.9E-812081233IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.74112091238IPR007087Zinc finger, C2H2
SMARTSM003550.001412091233IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012111233IPR007087Zinc finger, C2H2
SuperFamilySSF576678.1E-812271261No hitNo description
Gene3DG3DSA:3.30.160.601.3E-812341261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.8512391265IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.90712391270IPR007087Zinc finger, C2H2
PROSITE patternPS00028012411265IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1273 aa     Download sequence    Send to blast
MAEASGNIEV FPWLKTLPVA PEYYPTLEEF QDPIAYIFKI EKEASKYGIC KIVPPLPAPK  60
QKTALANLNR SLSARPGSNG PTFTTRQQQI GFCPRKHRPV KKPVWQSGET YTVQQFQAKA  120
KAFEKNYLKR NSKRALTALE IETLYWKATV DKPFSVEYAN DMPGSAFAPK KAGSGSVGAG  180
GIGEVATLAD TEWNMRGVSR SKGSLLKFMK EEIPGVTSPM VYLAMMFSWF AWHVEDHDLH  240
SLNYLHMGAG KTWYGVPRDA AVAFEEVISV QGYAGETNPL VTFATLGEKT TVMSPEVLLS  300
AGIPCCRLVQ NAGDFVVTFP RAYHSGFSHG FNCGEASNIA TPEWLRFAKD AAIRRASTNC  360
PPMVSHFQLL YDLALSLCSR VPKNIRIEPR SSRLKDKKKS EGDMLVKELF VEDLNSNNYL  420
LHVLGEGSPV VLLPQTSTGI SICSNLVAGT QSKVNSRLFL GLSSSDHELR SQKDIGYDHF  480
KLGRKQGMKQ VASVSSEKGK YSSLHAGNRL PDSGRKDDAQ SSPETERVNL DTGRGMTHKC  540
DTLSEQGLFS CVTCGILCYT CVAIIRPTEA AAHHLMSSDY HNFNDWTGNV GGVFATGRDP  600
NAGESDSSSG GLVKTAPGDF IDAPVESSDR IQKLNNGSVE GVSRTKARKE TSSLGLLALA  660
YANSSDSDED EVEADIPVEA CESRHTDSDD EVFLQVIDPY ANHRQRRAVS QGRSCQKIDN  720
SSPSGESNTL FGRSSHQLRS NQVTAKCISN KGEIAQNNAV APFDNTHMQF TSASDEDSFR  780
IHVFCLQHAV QVEEKLRQIG GADISLLCHP DYPKLEAQAK KVAEELGSDH FWRDISFREA  840
TKEDEEMIQS ALEIQEAIHG NGDWTVKLDI NLFYSANLSR SPLYSKQMPY NFIIYNAFGR  900
DSPDNTPEKS EYTGRGSGKQ RRAVVAGKWC GKVWMSSQVH PLLAERDIDE EQEQNKNISV  960
QIKTEVKSER PRERTVTGKT VATTCKTGKK RNSTAEDRNA SNTQLIADDH DDSLLCSLLQ  1020
QHRKTNFRSK RIKYETPEPQ KDVDKKKRFG SLIDDDPDGG PSARLNVDKK KRFGSLIDDD  1080
PDGGPSTRLR KRVPKPSKVS AAKLIKAKPA TTKQEESKKG PKVKLPSVNS TAKKEPVMKS  1140
PRSNTGRKMR DKEGEYHCDL EGCSMSFSSK PELTLHKKNV CPVEGCKKKF FSHKYLVQHR  1200
RVHMDDRPLK CPWKGCKMTF KWAWARTEHI RVHTGARPYV CAETGCGQTF RFVSDFSRHK  1260
RKTGHVSKKG RG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fwj_B7e-48184137402HISTONE DEMETHYLASE JARID1C
5fwj_A7e-48184137402HISTONE DEMETHYLASE JARID1C
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563761.10.0PREDICTED: lysine-specific demethylase REF6
SwissprotQ9STM30.0REF6_ARATH; Lysine-specific demethylase REF6
TrEMBLM1B7Y20.0M1B7Y2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000392240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49882331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6